Publications

FLAIR Lab Publications

  1. PreprintStructure-Aligned Protein Language Model
    Can Chen , David Heurtel-Depeiges , Robert M Vernon , Christopher James Langmead , Yoshua Bengio , and Quentin Fournier
    arXiv preprint arXiv:2505.16896, 2025
  2. PreprintProtein language models: Is scaling necessary?
    Quentin Fournier , Robert M Vernon , Almer Sloot , Benjamin Schulz , Sarath Chandar , and Christopher James Langmead
    bioRxiv, 2024

External Collaborations

  1. PreprintA systematic analysis of machine learning pipelines for robust antimicrobial resistance prediction
    Alex Aselstyne , Enamundram Naga Karthik , Meriem El Azami , Romain Pogorelcnik , Quentin Fournier , and Sarath Chandar
    bioRxiv, 2026
  2. PreprintCoPeP: Benchmarking Continual Pretraining for Protein Language Models
    Darshan Patil , Pranshu Malviya , Mathieu Reymond , Quentin Fournier , and Sarath Chandar
    arXiv preprint arXiv:2603.00253, 2026
  3. PreprintNovoMolGen: Rethinking Molecular Language Model Pretraining
    Kamran Chitsaz , Roshan Balaji , Quentin Fournier , Nirav Pravinbhai Bhatt , and Sarath Chandar
    arXiv preprint arXiv:2508.13408, 2025