Publications

FLAIR Lab Publications

  1. PreprintpLM representations unlock metagenomic space beyond homology
    bioRxiv, 2026
  2. PreprintHigh-resolution dissection of concept acquisition in different families of protein language models
    bioRxiv, 2026
  3. PreprintStructure-Aligned Protein Language Model
    arXiv preprint arXiv:2505.16896, 2025
  4. PreprintProtein language models: Is scaling necessary?
    bioRxiv, 2024

External Collaborations

  1. PreprintA systematic analysis of machine learning pipelines for robust antimicrobial resistance prediction
    Alex Aselstyne , Enamundram Naga Karthik , Meriem El Azami , Romain Pogorelcnik , Quentin Fournier , and Sarath Chandar
    bioRxiv, 2026
  2. PreprintCoPeP: Benchmarking Continual Pretraining for Protein Language Models
    arXiv preprint arXiv:2603.00253, 2026
  3. PreprintNovoMolGen: Rethinking Molecular Language Model Pretraining
    arXiv preprint arXiv:2508.13408, 2025